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Actually, there isn't anything that can be done.

Unless you have a modified Playstation 2 that can you can manually view and debug any data write files (game save data), you must accept the fact that your save data has been mashed apart somehow- whether from game error, a simple power surge, or that Tomb Raider developers forgot to close a simple concatenation code.

Aye, looks about time to start over.

Well, it's not really anything to do. If I had come into the same situation, I would just bite my lip and start over.

Well... I believe that Tomb Raider: Anniversary was multi-platform, but originally it debuted specifically on the PS2, waited a few months, and then moved to Wii and perhaps other platforms. I guess it would have helped too if which system was the game being played on.